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Abstract Release of iron (Fe) from continental shelves is a major source of this limiting nutrient for phytoplankton in the open ocean, including productive Eastern Boundary Upwelling Systems. The mechanisms governing the transport and fate of Fe along continental margins remain poorly understood, reflecting interaction of physical and biogeochemical processes that are crudely represented by global ocean biogeochemical models. Here, we use a submesoscale‐permitting physical‐biogeochemical model to investigate processes governing the delivery of shelf‐derived Fe to the open ocean along the northern U.S. West Coast. We find that a significant fraction (∼20%) of the Fe released by sediments on the shelf is transported offshore, fertilizing the broader Northeast Pacific Ocean. This transport is governed by two main pathways that reflect interaction between the wind‐driven ocean circulation and Fe release by low‐oxygen sediments: the first in the surface boundary layer during upwelling events; the second in the bottom boundary layer, associated with pervasive interactions of the poleward California Undercurrent with bottom topography. In the water column interior, transient and standing eddies strengthen offshore transport, counteracting the onshore pull of the mean upwelling circulation. Several hot‐spots of intense Fe delivery to the open ocean are maintained by standing meanders in the mean current and enhanced by transient eddies and seasonal oxygen depletion. Our results highlight the importance of fine‐scale dynamics for the transport of Fe and shelf‐derived elements from continental margins to the open ocean, and the need to improve representation of these processes in biogeochemical models used for climate studies. 

Abstract. The trace metal iron (Fe) is an essential micronutrient that controls phytoplankton productivity, which subsequently affects organic matter cycling with feedback on the cycling of macronutrients. Along the continental margin of the US West Coast, high benthic Fe release has been documented, in particular from deep anoxic basins in the Southern California Borderland. However, the influence of this Fe release on surface primary production remains poorly understood. In the present study from the Santa Barbara Basin, in situ benthic Fe fluxes were determined along a transect from shallow to deep sites in the basin. Fluxes ranged between 0.23 and 4.9 mmol m−2 d−1, representing some of the highest benthic Fe fluxes reported to date. To investigate the influence of benthic Fe release from the oxygen-deficient deep basin on surface phytoplankton production, we combined benthic flux measurements with numerical simulations using the Regional Ocean Modeling System coupled to the Biogeochemical Elemental Cycling (ROMS-BEC) model. For this purpose, we updated the model Fe flux parameterization to include the new benthic flux measurements from the Santa Barbara Basin. Our simulations suggest that benthic Fe fluxes enhance surface primary production, supporting a positive feedback on benthic Fe release by decreasing oxygen in bottom waters. However, a reduction in phytoplankton Fe limitation by enhanced benthic fluxes near the coast may be partially compensated for by increased nitrogen limitation further offshore, limiting the efficacy of this positive feedback. 

Abstract In Eastern boundary upwelling systems, such as the California Current System (CCS), seasonal upwelling brings low oxygen and low pH waters to the continental shelf, causing ocean acidification and hypoxia (OAH). The location, frequency, and intensity of OAH events is influenced by a combination of large‐scale climatic trends, seasonal changes, small‐scale circulation, and local human activities. Here, we use results from two 20‐year long submesoscale‐resolving simulations of the Northern and Southern U.S. West Coast (USWC) for the 1997–2017 period, to describe the characteristics and drivers of OAH events. These simulations reveal the emergence of hotspots in which seasonal declines in oxygen and pH are accompanied by localized short‐term extremes in OAH. While OAH hotspots show substantial seasonal variability, significant intra‐seasonal fluctuations occur, reflecting the interaction between low‐ and high‐frequency forcings that shape OAH events. The mechanisms behind the seasonal decreases in pH and oxygen vary along the USWC. While remineralization remains the dominant force causing these declines throughout the coast, physical transport partially offsets these effects in Southern and Central California, but contributes to seasonal oxygen loss and acidification on the Northern Coast. Critically, the seasonal decline is not sufficient to predict the occurrence and duration of OAH extremes. Locally enhanced biogeochemical rates, including shallow benthic remineralization and rapid wind‐driven transport, shape the spatial and temporal patterns of coastal OAH. 

Abstract. Nitrogen (N) plays a central role in marine biogeochemistry by limiting biological productivity in the surface ocean; influencing the cycles of other nutrients, carbon, and oxygen; and controlling oceanic emissions of nitrous oxide (N2O) to the atmosphere. Multiple chemical forms of N are linked together in a dynamic N cycle that is especially active in oxygen minimum zones (OMZs), where high organic matter remineralization and low oxygen concentrations fuel aerobic and anaerobic N transformations. Biogeochemical models used to understand the oceanic N cycle and project its change often employ simple parameterizations of the network of N transformations and omit key intermediary tracers such as nitrite (NO2-) and N2O. Here we present a new model of the oceanic N cycle (Nitrogen cycling in Oxygen Minimum Zones, or NitrOMZ) that resolves N transformation occurring within OMZs and their sensitivity to environmental drivers. The model is designed to be easily coupled to current ocean biogeochemical models by representing the major forms of N as prognostic tracers and parameterizing their transformations as a function of seawater chemistry and organic matter remineralization, with minimal interference in other elemental cycles. We describe the model rationale, formulation, and numerical implementation in a one-dimensional representation of the water column that reproduces typical OMZ conditions. We further detail the optimization of uncertain model parameters against observations from the eastern tropical South Pacific OMZ and evaluate the model's ability to reproduce observed profiles of N tracers and transformation rates in this region. We conclude by describing the model's sensitivity to parameter choices and environmental factors and discussing the model's suitability for ocean biogeochemical studies. 

Abstract Eastern boundary upwelling systems (EBUSs) are among the most productive regions in the ocean because deep, nutrient‐rich waters are brought up to the surface. Previous studies have identified winds, mesoscale eddies and offshore nutrient distributions as key influences on the net primary production in EBUSs. However uncertainties remain regarding their roles in setting cross‐shore primary productivity and ecosystem diversity. Here, we use a quasi‐two‐dimensional (2D) model that combines ocean circulation with a spectrum of planktonic sizes to investigate the impact of winds, eddies, and offshore nutrient distributions in shaping EBUS ecosystems. A key finding is that variations in the strength of the wind stress and the nutrient concentration in the upwelled waters control the distribution and characteristics of the planktonic ecosystem. Specifically, a strengthening of the wind stress maximum, driving upwelling, increases the average planktonic size in the coastal upwelling zone, whereas the planktonic ecosystem is relatively insensitive to variations in the wind stress curl. Likewise, a deepening nutricline shifts the location of phytoplankton blooms shore‐ward, shoals the deep chlorophyll maximum offshore, and supports larger phytoplankton across the entire domain. Additionally, increased eddy stirring of nutrients suppresses coastal primary productivity via “eddy quenching,” whereas increased eddy restratification has relatively little impact on the coastal nutrient supply. These findings identify the wind stress maximum, isopycnal eddy diffusion, and nutricline depth as particularly influential on the coastal ecosystem, suggesting that variations in these quantities could help explain the observed differences between EBUSs, and influence the responses of EBUS ecosystems to climate shifts. 

Abstract Submesoscale coherent vortices (SCVs) are long‐lived subsurface‐intensified eddies that advect heat, salt, and biogeochemical tracers throughout the ocean. Previous observations indicate that SCVs are abundant in the Arctic because sea ice suppresses surface‐intensified mesoscale structures. Regional observational and modeling studies have indicated that SCVs may be similarly prevalent beneath Antarctic sea ice, but there has been no previous systematic attempt to observe these eddies. This study presents the discovery of eddies in the Southern Ocean's seasonally sea ice‐covered region using the Marine Mammals Exploring the Oceans Pole to Pole (MEOP) hydrographic measurements. Eddies are identified via a novel algorithm that utilizes anomalies in spice, isopycnal separation, and dynamic height along MEOP seal tracks. This algorithm is tested and calibrated by simulating the MEOP seal tracks using output from a 1/48 global ocean/sea ice model, in which subsurface eddies are independently identified via the Okubo–Weiss parameter. Approximately 60 detections of cyclonic and over 100 detections of anticyclonic SCVs are identified, with typical dynamic height anomalies of , core depths of , and vertical half‐widths of , similar to their Arctic counterparts. The eddies exhibit a pronounced geographical asymmetry: cyclones are exclusively observed in the open ocean, while 90% of the anticyclones are located on the continental shelf, consistent with injection of low‐potential vorticity waters by surface buoyancy loss. These findings provide a first observational characterization of eddies in the seasonally ice‐covered Southern Ocean, which will serve as a basis for future investigation of their role in near‐Antarctic circulation and tracer transport. 

The air–sea exchange and oceanic cycling of greenhouse gases (GHG), including carbon dioxide (CO2), nitrous oxide (N2O), methane (CH4), carbon monoxide (CO), and nitrogen oxides (NOx = NO + NO2), are fundamental in controlling the evolution of the Earth’s atmospheric chemistry and climate. Significant advances have been made over the last 10 years in understanding, instrumentation and methods, as well as deciphering the production and consumption pathways of GHG in the upper ocean (including the surface and subsurface ocean down to approximately 1000 m). The global ocean under current conditions is now well established as a major sink for CO2, a major source for N2O and a minor source for both CH4 and CO. The importance of the ocean as a sink or source of NOx is largely unknown so far. There are still considerable uncertainties about the processes and their major drivers controlling the distributions of N2O, CH4, CO, and NOx in the upper ocean. Without having a fundamental understanding of oceanic GHG production and consumption pathways, our knowledge about the effects of ongoing major oceanic changes—warming, acidification, deoxygenation, and eutrophication—on the oceanic cycling and air–sea exchange of GHG remains rudimentary at best. We suggest that only through a comprehensive, coordinated, and interdisciplinary approach that includes data collection by global observation networks as well as joint process studies can the necessary data be generated to (1) identify the relevant microbial and phytoplankton communities, (2) quantify the rates of ocean GHG production and consumption pathways, (3) comprehend their major drivers, and (4) decipher economic and cultural implications of mitigation solutions. 

Abstract Within oxygen minimum zones, anaerobic processes transform bioavailable nitrogen (N) into the gases dinitrogen (N₂) and nitrous oxide (N₂O), a potent greenhouse gas. Mesoscale eddies in these regions create heterogeneity in dissolved N tracers and O₂concentrations, influencing nonlinear N cycle reactions that depend on them. Here, we use an eddy‐resolving model of the Eastern Tropical South Pacific to show that eddies enhance N₂production by between 43% and 64% at the expense of reducing N₂O production by between 94% and 104% due to both the steep increase of progressive denitrification steps at vanishing oxygen, and the more effective inhibition of N₂O consumption relative to production. Our findings reveal the critical role of eddies in shaping the N cycle of oxygen minimum zones, which is not currently represented by coarse models used for climate studies. 

Abstract Eddies play a crucial role in shaping ocean dynamics by affecting material transport, and generating spatio‐temporal heterogeneity. However, how eddies at different scales modulate biogeochemical transformation rates remains an open question. Applying a multi‐scale decomposition to a numerical simulation, we investigate the respective impact of mesoscale and submesoscale eddies on nutrient transport and biogeochemical cycling in the California Current System. First, the non‐linear nature of nutrient uptake by phytoplankton results in a 50% reduction in primary production in the presence of eddies. Second, eddies shape the vertical transport of nutrients with a strong compensation between mesoscale and submesoscale. Third, the eddy effect on nutrient uptake is controlled by the covariance of temperature, nutrient and phytoplankton fluctuations caused by eddies. Our results shed new light on the tight interaction between non‐linear fluid dynamics and ecosystem processes in realistic eddy regimes, which remain largely under‐resolved by global Earth system models.